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Correspondence to:
Dago Dimster-Denk
Gene expression profiling is rapidly becoming a mainstay of functional genomic studies. However, there have been relatively few studies of how the data from expression profiles integrate with more classic approaches to examine gene expression. This study used gene expression profiling of a portion of the genome of Saccharomyces cerevisiae to explore the impact of blocks in the isoprenoid biosynthetic pathway on the expression of genes and the regulation of this pathway. Approximately 50% of the genes whose expression was altered by blocks in isoprenoid biosynthesis were genes previously known to participate in the pathway. In contrast to this simple correspondence, the regulatory patterns revealed by different blocks, and in particular by antifungal azoles, was complex in a manner not anticipated by earlier studies.Dimster-Denk, D., J. Rine, J. Phillips, S. Scherer, P. Cundiff, K. DeBord, D. Gilliland, S. Hickman, A. Jarvis, L. Tong, and M. Ashby. Comprehensive evaluation of isoprenoid biosynthesis regulation in Saccharomyces cerevisiae utilizing the Genome Reproter Matrix(TM). J. Lipid Res. 1999. 40: 850860.
Supplementary key words:
isoprenoid pathway regulation, genome expression profiling, Saccharomyces cerevisiae
Copyright © 1999 by Lipid Research, Inc.
Original Article
Comprehensive evaluation of isoprenoid biosynthesis regulation in Saccharomyces cerevisiae utilizing the Genome Reporter Matrix(TM)
Dago Dimster-Denka,
Jasper Rineb,
John Phillipsa,
Stewart Scherera,
Paige Cundiffa,
Kristin DeBorda,
Doug Gillilanda,
Scott Hickmana,
Amy Jarvisa,
Lisa Tonga, and
Matthew Ashbya
a Acacia Biosciences, Inc., 4136 Lakeside Drive, Richmond, CA 94806
b Department of Molecular and Cell Biology, 401 Barker Hall, University of California, Berkeley, CA 94720
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