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Journal of Lipid Research, Vol. 45, 54-62, January 2004 Characterization of free endogenous C14 and C16 sphingoid bases from Drosophila melanogaster
* Children's Hospital, Oakland Research Institute, 5700 Martin Luther King Jr. Way, Oakland, CA 94609 Published, JLR Papers in Press, September 16, 2003. DOI 10.1194/jlr.M300005-JLR200
1 To whom correspondence should be addressed. e-mail: jsaba{at}chori.org
Sphingolipid metabolites function as signaling molecules in mammalian cells, influencing cell proliferation, migration, and death. Recently, sphingolipid signaling has been implicated in the regulation of developmental processes in Drosophila melanogaster. However, biochemical analysis of endogenous Drosophila sphingoid bases has not been reported. In this study, a rapid HPLC-based method was developed for the analysis of free sphingoid bases endogenous to Drosophila. Four molecular species of endogenous free sphingoid bases were observed in adult flies and identified as C14 and C16 sphingosine (Sph) and C14 and C16 dihydrosphingosine (DHS). The C14 molecular species were the most prevalent, accounting for 94% of the total free sphingoid bases in adult wild-type flies. An Sph kinase (SK) mutant demonstrated significant accumulation of all four sphingoid bases, whereas a serine palmitoyltransferase mutant demonstrated low but detectable levels. When endogenous sphingoid bases were evaluated at different stages of development, the observed ratio of Sph to DHS increased significantly from early embryo to adulthood. Throughout development, this ratio was significantly lower in the SK mutant as compared with the wild-type. This is the first report describing analysis of free C14 and C16 sphingoid bases from Drosophila. The biochemical characterization of these lipids from mutant models of sphingolipid metabolism should greatly facilitate the analysis of the biological significance of these signaling molecules.
Abbreviations: DHS, dihydrosphingosine; LCB, free long-chain sphingoid base; LCBP, phosphorylated free long-chain sphingoid base; OPA, ortho-phthalaldehyde; SK, sphingosine kinase; Sph, sphingosine; SPT, serine palmitoyltransferase Supplementary key words high performance liquid chromatography sphingolipid long chain sphingoid base sphingosine dihydrosphingosine signaling
The biochemical pathways of sphingolipid metabolism have been well characterized in the budding yeast, Saccharomyces cerevisiae, and in mammalian cells (Fig. 1) . The free long-chain sphingoid bases (LCBs) and their phosphorylated (LCBP) and acylated (ceramide) derivatives formed in these pathways are potent signaling molecules that have been implicated in signaling pathways that regulate cell death, survival, differentiation, migration, and lipid homeostasis (16). Accordingly, methods have been developed for the analysis of these compounds in different cell types. Sphingolipids have been most thoroughly characterized in mammalian cells, in which the predominant molecular species of free LCBs are C18 and C20 sphingosine (Sph) and C18 and C20 dihydrosphingosine (DHS), and in Saccharomyces cerevisiae, in which the predominant molecular species are C18 and C20 phytosphingosine and C18 and C20 DHS (711). Sphingolipid molecular structures have also been determined for numerous other species (1219). However, in most of the latter, the sphingoid backbone structures have been determined through degradative analysis of higher order sphingolipids, whereas the structural characterization and quantitation of LCB signaling molecules have not been reported. Despite this caveat, it appears that significant diversity exists among LCBs of different species with regard to carbon chain length, hydroxylation and methylation state, and saturation.
Recently, sphingolipid intermediates have been implicated in the regulation of development and physiology (2026). In Drosophila, we have found that sphingolipid intermediates are involved in maintaining reproductive function, viability, and muscle integrity (26). Drosophila provides a powerful genetic model system for dissecting signaling pathways and determining their roles in animal development. Although only a few Drosophila enzymes of sphingolipid metabolism have been characterized (2528) (Fig. 1), the identification of candidate genes and the ease of their genetic manipulation make this an ideal system for elucidating developmental and physiological roles of sphingolipid signal transduction at the level of the whole organism. In this study, we describe the identification and quantification of C14 and C16 LCBs endogenous to Drosophila and evaluate their presence throughout fly development. Knowledge of Drosophila endogenous LCB structure and metabolism should afford the most effective use of this system in moving toward a better understanding of the biological significance of these enigmatic lipids.
Drosophila melanogaster lines The lace gene encodes one subunit of a Drosophila serine palmitoyltransferase (SPT). Inheritance of two lacek05305 null alleles is reported to be uniformly lethal, whereas the heterozygous allelic combination used in these experiments, lacek05305/lace2, leads to severe developmental phenotypes and a low percentage of viable progeny (25). A Drosophila line homozygous for a null allele (unpublished observations) of one of two putative Sph kinase (SK) genes was also utilized in these experiments. This mutant (Sk2KG05894) was created by the insertion of a P-element into the 5' UTR of CG2159, as previously described (29). The product of this gene demonstrates SK activity against a wide range of LCB substrates and functionally complements a yeast SK mutant (unpublished observations). Wild-type Canton-S (BL-1), lace2 (BL-3156), lacek05305 (BL-12176), and Sk2KG05894 (BL-14133) lines were obtained from the Bloomington Drosophila Stock Center (Indiana University, Bloomington, IN). Flies were reared on standard fly media at room temperature. In all cases, control and mutant flies were reared in parallel under identical conditions. For developmental analysis, adult flies were allowed to deposit embryos on grape juice agar plates. After the collection period, plates were removed from the collection chamber, covered, and aged at room temperature to obtain appropriately staged embryos. For example, to collect 612 h embryos, adults were exposed to plates for 6 h, and plates were removed and aged for an additional 6 h before embryos were collected. Embryos were removed from the plates by washing with 0.7% sodium chloride-0.03% Triton X-100, rinsed extensively with water, and frozen at -70°C for storage.
Preparation of Drosophila lipid extracts
Solid-phase extraction on a Strata C18-E column
HPLC analysis
Mass spectrometry analysis of Drosophila LCBs
HPLC separation of sphingoid bases A limited number of reports describing the structural analysis of higher order sphingolipids from dipteran insects indicate that the sphingoid backbone found in these complex molecules is most often a C14 Sph and, to a lesser extent, a C16 Sph (1719). On the basis of these reports, an HPLC method was developed for the separation of LCBs with a carbon number of 14 to 18. Figure 2A illustrates the HPLC separation of five different LCB standards with 14 to 18 carbon atoms. (C14 DHS is not commercially available at the present time and is, therefore, not included as a standard in this experiment).
Solid-phase extraction of sphingoid bases HPLC analysis of LCBs from crude chloroform-methanol lipid extracts from adult flies was hampered by the presence of a high content of contaminating fluorescent material (results not shown). Consequently, a solid-phase extraction step using a Strata C18-E column prior to HPLC analysis was introduced. Table 1 shows the recovery of LCB standards from the Strata C18-E column using different elution solvents. Surprisingly, when methanol was employed as the eluting solvent, recovery of all the LCB standards was less than 2%. The inadequate recovery of the LCB standards from the Strata C18-E column was vastly improved by addition of 10% by volume of a 20 mM ammonium acetate solution to the methanol elution solvent. By employing this elution system, recovery in the range of 50% to 95% was obtained for the C14 and C16 LCB standards. However, inadequate recoveries were still obtained for the C18 LCB standards. In an attempt to improve the recovery of the C18 LCBs from the column, the elution solvent chloroform-methanol (1:1; v/v) was introduced. By employing this more hydrophobic elution solvent, a very moderate recovery was found for all the LCB standards. In agreement with the results obtained with methanol, the addition of ammonium acetate vastly improved the recovery of all the LCB standards from the column. Recovery of the C14 to C18 LCB standards with the elution solvent chloroform-methanol-20 mM ammonium acetate (4.5:4.5:1; v/v/v) was in the range of 60% to 80%. Losses associated with the two-phase extraction and subsequent washes were demonstrated to be consistently <16% for all LCB standards (data not shown).
HPLC analysis of LCBs from Drosophila Elution of adult fly lipids from the Strata C18-E column with chloroform-methanol-20 mM ammonium acetate (4.5:4.5:1; v/v/v), resulted in an HPLC spectrum with significant unwanted background fluorescence (data not shown). Therefore, on the basis of the recovery of the LCB standards from the Strata C18-E column under various solvent conditions (Table 1), a methanol wash was introduced prior to elution with chloroform-methanol-20 mM ammonium acetate (4.5:4.5:1; v/v/v) (see Experimental Procedures for details). Figure 2 demonstrates an HPLC run of Strata C18-E column-purified LCBs using this method. Figure 2A shows the HPLC separation of LCB standards. All the C14 to C18 LCB standards evaluated were well separated on the HPLC in the 40 min run. Lipid extracts from three different lines of adult Drosophila flies were analyzed. The lipid profile of wild-type flies (Fig. 2B) was compared with that of an SK (Sk2) mutant (Fig. 2C) and an SPT (lace) mutant (See Experimental Procedures) (Fig. 2D). The Sk2 mutants would be predicted to manifest a reduced capacity to phosphorylate LCBs and, as a consequence, should demonstrate increased levels of LCBs (Fig. 1). In contrast, the hypomorphic lace mutants are defective in the first step of sphingolipid de novo biosynthesis and would be predicted to exhibit diminished levels or complete absence of LCBs. The HPLC runs demonstrated five peaks that were increased in the Sk2 mutant and decreased in the lace mutant. Three peaks eluting with the same retention times as the C14 Sph, C16 Sph, and C16 DHS standards were identified in the fly extracts (peaks 1, 3, 4). In addition, a peak with a retention time between that of C14 Sph and C16 Sph (peak 2) and a peak with a retention time shorter than that of C14 Sph were identified. No peaks that eluted with retention times corresponding to the C18 LCB standards were observed. Following isocratic elution from a C18 reverse-phase HPLC column, a plot of the carbon length of a derivatized sphingoid base standard against the log of the retention time shows a linear correlation between sphingoid bases belonging to the same molecular class (11). This can be useful for the identification of an unknown sphingoid base. Figure 3 demonstrates a plot of OPA-derivatized LCB standards and the unknown peak 2. As shown in the figure, a linear correlation exists between the retention time of the unknown peak 2 and the two DHS standards in this plot. This finding strongly suggests that peak 2 is C14 DHS. The identity of the peak that elutes ahead of C14 Sph remains unknown. It is likely to represent a sphingolipid, and its retention time could suggest a C12 DHS. However, mass spectrometry analysis gave no indication of endogenous C12 LCBs in the flies (see below).
Mass spectrometry analysis of LCBs from Drosophila LCBs can be identified through their patterns of collision-induced dissociation and precursor ion scans using ESI+ (31). Based on their unique molecular structures, typical decomposition products arise from the loss of two water molecules. Figure 4A shows a precursor ion scan of a C14 Sph standard. The precursor ion spectrum of m/z 208 (C14 Sph minus two water molecules) shows parents as m/z 244 (C14 Sph) and m/z 226 (C14 Sph minus one water molecule). To verify the existence of C14 DHS in Drosophila, we analyzed a Strata C18-E column-purified lipid extract by ESI+. A lipid extract from the Sk2 mutant was chosen for the analysis, because it demonstrated elevated levels of LCBs (Fig. 2C). Initially, we sought the presence of endogenous C14 Sph. Figure 4B shows a precursor ion spectrum of m/z 208 identifying C14 Sph (m/z 244) in the extract. Subsequently, we sought the presence of C14 DHS. Figure 4C shows a precursor ion spectrum of m/z 210 identifying endogenous C14 DHS (m/z 246). In addition, precursor ion scans of m/z 236 and m/z 238 identified endogenous C16 Sph and C16 DHS in the fly extract (results not shown). Precursor ion scans of m/z 264 and m/z 266 failed to identify C18 LCBs in the fly extract, supporting the results obtained from the HPLC analysis (Fig. 2). In addition, precursor ion scans of m/z 180 and m/z 182 failed to identify C12 LCBs in the fly extract.
C14 and C16 sphingoid bases in Drosophila models of sphingolipid metabolism Endogenous Drosophila LCBs were quantified by performing HPLC separation of Strata C18-E column-purified extracts either with or without the addition of a defined amount of C14 Sph, C16 Sph, and C16 DHS standard. Separation was followed by comparison of the integrated area obtained for each fluorescent LCB peak (Table 2). To quantify C14 DHS, an estimated value for its percent recovery through the Strata C18-E column was found based on the percent recovery of the C16 DHS standard and the difference in the percent recovery of the C14 and C16 Sph standard (see Table 2 legend). Interestingly, lace and Sk2 mutant flies differed appreciably from wild-type flies in both the total amount and composition of LCBs, as determined by analysis of lipid extracts from each line. The total amount of LCBs in the wild-type was 1.3 nmol/100 mg of whole flies. The Sk2 mutants exhibited a 1.8-fold increase, and the lace mutants an 8.4-fold decrease in the total amount of LCBs in comparison to wild-type flies. Sph accounted for 90% of the total amount of LCBs in the wild-type flies, whereas DHS accounted for 10%. Therefore, the molar ratio of Sph to DHS was 9:1. In the Sk2 mutant, the corresponding values were 66% Sph and 34% DHS, resulting in a molar ratio of 2:1, whereas in the lace mutant the corresponding values were 84% Sph and 16% DHS, resulting in a molar ratio of 5:1.
Sphingoid bases in Drosophila development Genetic studies have implicated a role for sphingolipid intermediates in the process of development (2026). However, quantification of these molecules throughout development has not been performed. To investigate whether a biochemical basis for the potential role of sphingolipid intermediates exists, we evaluated the endogenous LCBs at different stages of Drosophila development. Table 3 lists the results obtained for the wild-type fly. The total amount of LCBs remained fairly constant throughout development, ranging from 1.25 to 2.10 nmol LCBs/100 mg of fly material. The C14 LCBs accounted for 92% to 96% of the total LCBs, except at the larval stage, where the C14 LCBs only accounted for 72%. Developmental progress resulted in a significant increase in the molar ratio of Sph to DHS. Development from early embryo to adulthood resulted in a 10-fold increase, from 0.89 to 9.12, in the Sph:DHS ratio (Tables 2, 3).
To further investigate the role of LCBs in development, we performed an analysis of the Sk2 mutant (Table 4). Several differences were observed when the Sk2 mutant was compared with the wild type. The first was the presence of a significant increase in the level of total LCBs at all stages of development in the Sk2 mutant. Throughout development from early embryo to pupa, the level of LCBs was increased 4- to 7-fold, and in the adult fly, the level was increased 2-fold (Tables 2, 4). Second, the ratio of Sph to DHS was significantly lower in the Sk2 mutant at all stages analyzed, and the development from early embryo to adulthood resulted in a 6-fold increase, from 0.35 to 1.98, in the ratio of Sph to DHS (Tables 2, 4). Third, the Sk2 mutant displayed a much larger variation in the total amount of LCBs throughout development, ranging from 1.98 to 13.72 nmol/100 mg of fly material (Tables 2, 4). Fourth, the amount of C16 LCBs in the Sk2 mutant at the larval and pupal stage was 9- and 13-fold higher, respectively, than the amount in the wild type. More than half of the LCBs found in the Sk2 larvae were accounted for by C16 molecular species.
In summary, these results suggest that under normal conditions, the total amount of LCBs remains fairly constant throughout development. In contrast, the ratio of Sph to DHS increases, and when the fly reaches adulthood, the ratio of Sph to DHS is 9:1. Lack of Sk2 activity clearly affects these parameters and leads to an increase in total LCBs as well as a lower Sph:DHS ratio.
This work describes the identification and quantification of LCBs endogenous to Drosophila. By developing a simple method based on solid-phase extraction and HPLC separation, we found that the predominant Drosophila LCBs were C14 and C16 molecules. Whereas the predominant endogenous sphingoid bases of mammalian cells and the yeast Saccharomyces cerevisiae are C18 and C20 structures, neither HPLC nor mass spectrometry analysis provided any indication that C18 sphingoid bases exist in Drosophila under the conditions examined. This does not preclude the possibility that negligible amounts of C18 sphingoid bases could exist at baseline and could potentially increase under certain conditions. A substantial recovery of the C14 to C18 LCBs was obtained from the Strata C18-E column following elution with the solvent system chloroform-methanol-20 mM ammonium acetate (4.5:4.5:1; v/v/v). However, the total amount of lipid eluted in this solvent system was several-fold higher than the lipid eluted in methanol-20 mM ammonium acetate (9:1; v/v) (results not shown). Therefore, when only shorter chain LCBs such as C14 and C16 are to be quantified or recovered, it may be advantageous to elute with methanol-20 mM ammonium acetate (9:1; v/v) to attain maximum purity of the sample. In contrast, to obtain a sufficient recovery of longer chain LCBs, or when the LCB chain length of a sample is unknown, a more hydrophobic solvent such as chloroform-methanol-20 mM ammonium acetate (4.5:4.5:1; v/v/v) may be employed. Our finding of C14 and C16 LCBs in Drosophila has several important ramifications for sphingolipid biochemistry and metabolism in Drosophila. The first is that these LCBs are likely to exhibit significant differences in biophysical properties, subcellular localization, effects on membranes, and mechanisms of transport, in comparison with the longer chain sphingoid bases of mammalian cells and yeast. LCBs with a C14 backbone (as compared with a C18 backbone) are considerably less hydrophobic and, as a consequence, will exchange much more rapidly with a hydrophilic environment. This increased rate of exchange of the C14 compound could have important implications in the process of translocation and potentially in signal transduction in the fly. Second, these findings indicate that Drosophila enzymes of sphingolipid metabolism are likely to differ in their substrate specificities from those of mammalian cells and yeast. For example, palmitoyl-CoA is the preferred fatty acyl substrate for the yeast and mammalian SPT, which catalyzes the first step in sphingolipid biosynthesis through the condensation of palmitic acid and serine (3234). This enzymatic reaction results in the formation of a C18 sphingoid base. On the basis of our findings, it seems probable that a C12 fatty acyl-CoA is the preferred substrate of Drosophila SPT (or, more accurately, serine acyltransferase) for LCB formation. It has been reported that Drosophila fatty acid synthetase activity produces a substantial amount of C12 and C14 fatty acids (35). Hence, a ready pool of C12 and C14 acyl-CoA esters for LCB formation is likely to exist. Sphingoid bases can be derived either from de novo synthesis or from catabolism of higher order sphingolipids, as described for the sphingolipid metabolic pathway in mammalian cells (Fig. 1). In mammalian cells, the enzymatic conversion of DHS to Sph during de novo synthesis occurs subsequent to the acylation of DHS (36). The ratio of Sph to DHS can, therefore, serve as an indicator for the relative rate of de novo sphingolipid biosynthesis compared with sphingolipid degradation. We observed a substantial increase in the ratio of Sph to DHS during development in wild-type flies, although the total amount of LCBs remained fairly constant (Tables 2, 3). This indicates an increase in the breakdown of sphingolipids through the metabolic pathway (Fig. 1), and thereby suggests that particular LCB species may be important during the process of development. We observed a less-predominant increase in the ratio of Sph to DHS during development in the Sk2 mutant. Moreover, the Sph:DHS ratio was significantly lower at every stage of development analyzed, and large variations were observed in the total LCB content. Consistent with the notion that a tightly regulated LCB content and composition may be important in development is the finding of reproductive and flight defects in homozygote Sk2 mutant flies (unpublished observations). That a sufficient level of Sph is needed for proper development of the fly has been suggested in studies of the hypomorphic lace mutant. Homozygotes of the lace null allele die during the first instar larval stage, and hypomorphic alleles used in this study result in pronounced morphological defects and reduced viability. These phenotypes can be overcome by feeding with Sph (25). The altered Sph:DHS ratio suggests a significant perturbation of sphingolipid metabolism in both the lace mutant and in the Sk2 mutant. The precise biochemical mechanism responsible for this effect is unknown. However, in view of the diminished biosynthesis of sphingolipids in the lace mutant, it is feasible that a certain amount of DHS is conserved as needed for proper cellular function. Impaired incorporation of LCBs into sphingolipid biosynthesis might also be responsible for the accumulation of DHS in the Sk2 mutant. In support of this notion, it has been suggested that proper sphingolipid biosynthesis in yeast is dependent on a phosphorylation/dephosphorylation cycle mediated by SK and LCBP phosphatase activity (37). Biochemical analysis of the sphingolipid profiles of mutant Drosophila models in comparison to wild-type flies can provide important information complementary to genetic studies performed in this organism. In the case illustrated by the lace mutants analyzed in our study, the finding of residual LCBs indicates that some residual SPT activity exists in these mutants, thus accounting for the occasional survivors and reinforcing the vital function of sphingolipids in all metazoan and eukaryotic models studied thus far. Although it is conceivable that an activity exists in flies that converts C18 and C20 yeast sphingoid bases present in fly medium to C14 and C16 LCBs, no such activity has been described in any organism and thus we consider this highly unlikely. In the case of the Sk2 mutant, measurement of endogenous LCBs throughout development in comparison to wild-type flies indicates that significant perturbation of LCB metabolism is present in this mutant, even though a second SK (Sk1) gene is present and presumed to be functional. Analysis of LCBs in single and combination SK mutant models should clarify the contribution of each SK gene to LCB metabolism, uncover unique substrate specificities of each, and demonstrate the physiological consequences of LCB accumulation and LCBP depletion in the fly. In summary, we have developed an HPLC-based method for measurement of LCBs in Drosophila that is easily adopted for use in other organisms. We identified four free sphingoid bases of Drosophila as C14 and C16 Sph and DHS. This method was employed to characterize the LCB profile of adult wild-type flies as well as two interesting Drosophila mutants of sphingolipid metabolism. Furthermore, the LCB profile was characterized during fly development in a wild-type line and an Sk2 mutant line. The further identification and characterization of Drosophila genes of sphingolipid metabolism and the analysis of sphingolipids in corresponding mutant models should help define aspects of sphingolipid biochemistry unique to this powerful genetic system and facilitate the analysis of the biological significance of these signaling molecules.
The authors would like to thank Dr. Mark Shigenaga for expert advice on mass spectrometry and Karie Heinecke for technical assistance. This work was supported by The National Institutes of Health, Grant 1R01CA-77528 (J.D.S.), and The Muscular Dystrophy Association (G.L.H.). Manuscript received January 3, 2003 and in revised form September 2, 2003.
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