Originally published In Press as doi:10.1194/jlr.M600130-JLR200 on April 6, 2006
Journal of Lipid Research, Vol. 47, 1399-1405, July 2006
Copyright © 2006 by American Society for Biochemistry and Molecular Biology
Binding characteristics of a panel of monoclonal antibodies against the ligand binding domain of the human LDLr
Anh T. Nguyen*,
Tomoko Hirama
,
Vinita Chauhan*,
Roger MacKenzie
and
Ross Milne1,*,
* Lipoprotein and Atherosclerosis Research Group, University of Ottawa Heart Institute, Ottawa, Ontario, Canada
Institute for Biological Sciences, National Research Council, Ottawa, Ontario, Canada
Department of Pathology and Laboratory Medicine, University of Ottawa, Ottawa, Ontario, Canada
Published, JLR Papers in Press, April 6, 2006.
1 To whom correspondence should be addressed. e-mail: rmilne{at}ottawaheart.ca
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ABSTRACT
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To obtain a panel of monoclonal antibodies (MAbs) to study the folding and conformation of the low density lipoprotein receptor (LDLr), we have generated hybridomas from LDLr-deficient mice that had been immunized with the extracellular domain of the human LDLr. The 12 MAbs were specific for the ligand binding domain of the LDLr, with individual MAbs recognizing epitopes in ligand binding repeats 1, 2, 3, 5, and 7. A subset of the MAbs failed to react with the LDLr when disulfide bonds were reduced, and one MAb, specific for an epitope that spans ligand binding repeats 1 and 2, recognized two conformational forms of the LDLr with different affinities. Antibodies specific for ligand binding repeats 3, 5, and 7 completely blocked the binding of LDL particles to the LDLr on cultured human fibroblasts, whereas MAbs with epitopes in ligand binding repeats 1 and 2 partially blocked the binding of LDL to the LDLr. These anti-LDLr MAbs will serve as useful probes for further analysis of LDLr conformation and LDLr-mediated lipoprotein binding.
Abbreviations: apoE, apolipoprotein E; CETP, cholesteryl ester transfer protein; EGF, epidermal growth factor; EGFPHD, epidermal growth factor precursor homology domain; LBD, ligand binding domain; LDLr, low density lipoprotein receptor; MAb, monoclonal antibody
Supplementary key words low density lipoprotein receptor knockout mice structure-function analysis
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INTRODUCTION
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The low density lipoprotein receptor (LDLr) is located in clathrin-coated pits on the cell surface and can bind and mediate the endocytosis of plasma lipoproteins that contain either apolipoprotein E (apoE) or apoB-100. It has an important role in regulating cholesterol homeostasis, and mutations in the LDLr gene can lead to familial hypercholesterolemia. The 839 amino acid human LDLr is organized into five structural domains (1, 2). The amino terminal 292 residues constitute the ligand binding domain (LBD) that is composed of seven imperfect 40 residue repeats (R1R7) with a short linker between R4 and R5. The LBD is followed by the 400 residue epidermal growth factor (EGF) precursor homology domain (EGFPHD) that contains three EGF-like repeats, EGF-A, EGF-B, and EGF-C, and a ß-propeller subdomain inserted between EGF-B and EGF-C (3, 4). The EGFPHD is necessary for the pH-dependent dissociation of receptor and lipoprotein in the endosome (1). The third domain (O-linked sugar domain) is rich in threonine and serine residues that become O-glycosylated during the intracellular maturation of the receptor. A short transmembrane domain is followed by a 50 residue cytoplasmic tail that is required to localize the LDLr in clathrin-coated pits on the cell surface and for the endocytosis of ligands.
Each of the LBD repeats contains a site for the coordination of a calcium ion and six cysteine residues that form three intrarepeat disulfide bonds (58). Folding of newly synthesized LDLr occurs posttranslationally and is nonvectorial with the formation of transient, nonnative, long-range disulfide bonds that are subsequently isomerized into the native intrarepeat disulfide bonds that characterize the LDLr LBD (9). Binding of lipoproteins to the LDLr appears to be mediated by an interaction between acidic residues in the LDLr LBD and basic residues of apoE and apoB-100. By systematic deletion of individual ligand binding repeats of the LDLr, it has been shown that the repeats contribute differently to apoB-100- and apoE-mediated lipoprotein binding to the LDLr (10, 11). Deletion of individual repeats R3R7 results in a loss of LDL binding (apoB-100-mediated), whereas ß-VLDL binding (apoE-mediated) is impaired only when R5 is deleted. An LDLr fragment consisting of R4 and R5 is sufficient to bind to apoE-phospholipid vesicles (12). The crystal structure of an LDLr segment composed of the LBD and EGFPHD has been solved at pH 5.3 (4). In this structure, R4 and R5 are docked onto the ß-propeller with an interface that includes histidine 192 (His192) in R5 and His562 and His586 in the ß-propeller. It has been proposed that, on the cell surface, the extracellular domain of the LDLr would adopt an elongated structure, as has been visualized by cryoelectron microscopy (13) with R4 and R5 accessible for binding to ligand. When the LDLr-ligand complex is internalized and exposed to the acidic environment of the endosome (
pH 5.3), the LDLr would undergo a conformational change so that the extracellular domain would fold back on itself and the ß-propeller could displace bound lipoprotein (14, 15). In support of this model, it has been demonstrated that mutation of His192, His562, and His586 leads to an LDLr variant that binds LDL with high affinity at neutral pH but fails to release the ligand at pH 5.3 (16).
To obtain a panel of monoclonal antibody (MAb) probes to study the folding of the newly synthesized LDLr and the conformation of the mature receptor, we have generated hybridomas from LDLr-deficient (Ldlr/) mice that had been immunized with the extracellular domain of the human LDLr. Here, we describe the binding characteristics of these antibodies.
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EXPERIMENTAL PROCEDURES
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Expression and purification of a soluble fragment of the LDLr
The mammalian expression plasmid, pCMV5-LDLr1692, encoding residues 1692 of the LDLr (LDLr1692) was a gift from Dr. David Russell (University of Texas Southwestern Medical Center). Chinese hamster ovary K1 cells were cotransfected with pCMV5-LDLr1692 (15 µg of DNA) and pSV2neo (1.5 µg) by calcium phosphate precipitation (17). Stably transfected cell clones were selected using 700 µM G418 and were subsequently maintained with 500 µM G418. For the purification of LDLr1692 from cell supernatants, a high-expressing, LDLr1692-transfected clone was adapted for growth in CHO S-SFM II medium (Invitrogen, Burlington, Ontario, Canada) that was supplemented with 1% fetal bovine serum and cultured in a Spinner Basket 1 Cell Culture Bioreactor (New Brunswick Scientific, Edison, NJ) according to the manufacturer's recommendation. Cells were maintained for up to 1 month, and 400 ml of medium was harvested and replaced every 2 days. The anti-human LDLr MAb, C7 (18), was immobilized on cyanogen bromide-activated Sepharose 4B beads (Amersham, Baie D'Urfé, Québec, Canada) according to the manufacturer's instructions. The beads were washed with TBS containing 20 mM CaCl2 (TBS-CaCl2). Culture medium (400 ml) was passed over the beads, the column was washed with TBS-CaCl2, and bound LDLr1692 was eluted with 0.1 M glycine, pH 3. The fractions were dialyzed against TBS-CaCl2 and stored in liquid nitrogen. Characterization of LDLr1692 will be described in detail elsewhere.
Monoclonal antibodies
Ldlr/ mice (19) (a gift from Dr. Stewart Whitman, University of Ottawa Heart Institute) were immunized by subcutaneous injection of LDLr1692 (50 µg) emulsified in complete Freund's adjuvant. The mice received two additional boosts with 50 µg of LDLr1692 in incomplete Freund's adjuvant (Sigma-Aldrich, Oakville, Ontario, Canada) at 3 week intervals. Serum antibody titers were monitored 1 week after each boost by a solid-phase RIA with LDLr1692 as the immobilized antigen (20). Four days before the fusion and at least 3 weeks after the previous boost, a final boost (50 µg of LDLr1692 in 100 µl of PBS) was administered by tail vein injection. The protocol for the fusion of splenocytes from immunized mice with SP2-0 plasmacytoma cells has been described (20). Seven to 10 days after the fusion, hybridoma supernatants were tested for antibodies by solid-phase ELISA (20) with LDLr1692 as the immobilized antigen. Cells in positive wells were recloned twice on 96-well plates at a seeding density of one cell per well. Ascites was produced in BALB/c female mice by intraperitoneal injection of 5 x 106 hybridoma cells. The immunoglobulin isotype of MAbs was determined using a Mouse Monoclonal Antibody Isotyping Kit (Amersham). IgG was isolated from culture supernatant or from ascites by Sepharose Protein G affinity chromatography according to the manufacturer's recommendations (Amersham). Fab fragments of the IgG were produced by papain digestion and purified by Sepharose Protein A (Amersham) as described previously (21).
Expression of LDLr variants in COS7 cells
The plasmids pLDLr17, pLDLr17
R2, pLDLr17
R3, pLDLr17
R4, pLDLr17
linker, pLDLr17
R5, pLDLr17
AB, pLDLr2
R1, pLDLr2
A, pLDLr2
B, pLDLr2
C, pLDLr2
AB, and pLDLr2
EGF (10, 11) were a gift from Dr. David Russell (University of Texas Southwestern Medical Center) (10, 11). The plasmids pLDLr17
R6 and pLDLr17
R7 were generated from pLDLr17 with the ExSite Mutagenesis Kit (Stratagene) using the primer pairs 5'-gtgacactctgcgagggacccaacaagttc-3', 5'-gcagttttcctcgtcagatttgtccttgca-3' and 5'-gggaccaacgaatgcttggacaacaacggc-3', 5'-attaacgcagccaacttcatcgctcatgtc-3', respectively. COS7 cells were transfected with 2 µg of the plasmid to be tested using LipofectamineTM (Invitrogen, Burlington, Ontario, Canada). Cells were cultured in the presence of 10% fetal bovine serum to suppress the expression of the endogenous LDLr, and after 48 h, the cells were harvested and lysed for analysis.
Western blotting
Cell extracts were prepared and analyzed by Western blotting as described for the C7 anti-human LDLr monoclonal antibody (22). In certain experiments, cell extracts were subjected to SDS-PAGE under reducing conditions.
Surface plasmon resonance
The kinetics of binding of the anti-LDLr MAb IgG and Fab fragments to LDLr1692 were determined by surface plasmon resonance using a BIACORE 3000 biosensor system (BIACORE, Inc., Piscataway, NJ). Immunopurified LDLr1692 (15 µg/ml in 10 mM sodium acetate, pH 4.5) was coupled to a research-grade CM5 sensorchip (BIACORE) using the amine-coupling kit supplied by the manufacturer to give surface densities of
700 resonance units. Ethanolamine-blocked surfaces were used as references. Fab fragments were subjected to Supedex 75 (Amersham) gel filtration before analysis to remove any aggregates. Binding of the Fabs to the immobilized LDLr1692 was carried out using a running buffer of 10 mM HEPES, pH 7.4, containing 150 mM NaCl, 1.5 mM CaCl2, and 0.005% Surfactant P20 at a flow rate of 40 µl/min. For MAbs 5G2 and 3D8, 20 mM acetate buffer, pH 5.3, containing 150 mM NaCl, 1.5 mM CaCl2, and 0.005% Surfactant P20 was also used. Surfaces were regenerated with 50 mM HCl for 3 s. Data were evaluated using BIAevaluation 4.1 software (BIACORE).
Preparation and 125I labeling of LDL
Fresh plasma from normolipidemic subjects was supplemented with 1 mM EDTA, 0.02% NaN3, 0.5 mM phenylmethylsufonyl fluoride, and 0.05 µg/ml leupeptin. LDL was isolated at 4°C by successive preparative ultracentrifugations between densities of 1.019 and 1.063 g/ml (23). LDL was dialyzed against PBS containing 1 mM EDTA and 0.02% NaN3, sterilized by ultrafiltration, and stored at 4°C for up to 3 weeks. LDL was labeled with 125I as described by Bilheimer, Eisenberg, and Levy (24).
Antibody-mediated inhibition of LDL to the LDL receptor
The protocol for measuring competition between the anti-LDLr MAbs and 125I-LDL for binding to the LDLr on the surface of cultured human fibroblasts was adapted from that previously described for determining the ability of anti-apoB MAbs to inhibit the binding of 125I-LDL to the LDLr (25). Anti-LDLr MAbs (50 µg IgG/ml) were used in place of the anti-apoB MAbs.
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RESULTS
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From a single fusion, we obtained 12 stable hybridomas that secrete MAbs specific for the LDLr1692 fragment. To localize the epitopes recognized by the MAbs within the LDLr primary structure, we expressed, in COS7 cells, a series of LDLr variants that had deletions of individual LBD repeats, of the linker between R4 and R5, of individual or pairs of EGF-like repeats, or of the entire EGFPHD. Cell extracts containing the variant LDLrs were prepared and tested for reactivity with the MAbs by Western blotting. The reactivity of several of the MAbs is shown in Fig. 1
, and a summary of the reactivities of all of the MAbs is presented in Table 1
. All MAbs reacted with the wild-type receptor. MAbs 6B2, 7B10, and 8F11 did not react with an LDLr variant that lacked R1, and a variant lacking R2 was not recognized by MAbs 5A7 and 7A3. Deletion of either R1 or R2 prevented the binding of MAbs 3D8, 4C1, 4C6, and 4E4. The epitopes for MAbs 7H2 and 5G2 appear to be in R3 and R5, respectively, whereas the epitope recognized by 6E2 appears to be in R7. Deletion of the EGF-like repeats or the complete EGFPHD did not affect the binding of any of the antibodies. An epitope map based on these results is shown in Fig. 2
. Reduction of disulfide bridges in the LDLr or removal of Ca2+ from the medium has been reported to prevent the binding of both LDL and the well-characterized anti-LDLr MAb, C7, to the LDLr (22, 26). Therefore, we tested the new panel of MAbs for their reactivity with LDLr1692 that had been subjected to electrophoresis under reducing and nonreducing conditions (data not shown). Antibodies 6B2, 4E4, 7H2, 5G2, and 6E2 reacted only with the nonreduced LDLr1692 (indicated by asterisks in Fig. 2), whereas the other MAbs reacted under both reducing and nonreducing conditions. We confirmed that C7 did not recognize LDLr1692 after reduction. All MAbs recognized the LDLr in the presence of EDTA when analyzed by either Western blots or an ELISA assay (data not shown). Surprisingly, in our hands, the binding of C7 to immobilized LDLr1692 also appeared to be Ca2+-independent.

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Fig. 1. Binding of anti-low density lipoprotein receptor (LDLr) monoclonal antibodies (MAbs) to the LDLr and to LDLr variants that lack individual ligand binding domain LBD repeats ( 1 7), the linker between R4 and R5 ( L), epidermal growth factor (EGF)-like repeats ( A, B, C, and AB), or the entire epidermal growth factor precursor homology domain ( EGFPHD). COS7 cells were transfected with cDNA encoding the LDLr, LDLr variants, or the empty plasmid (pCMV5), and after 48 h, cell extracts were prepared and subjected to SDS-PAGE under nonreducing conditions. Migrated proteins were transferred to nitrocellulose membranes and tested for reactivity with the MAbs.
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Fig. 2. An epitope map of LDLr1692. The epitopes recognized by the panel of anti-LDLr MAbs were assigned to regions within the primary structure of LDLr1692 based on the results shown in Table 1. Epitopes marked with asterisks are immunoreactive only under nonreducing conditions. See text for additional details.
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Six antibodies were selected to represent each of the specificity groups for further characterization (these antibodies can be obtained by contacting the corresponding author). The kinetics of binding of purified Fab fragments to immobilized LDLr1692 were determined with a BIACORE 3000 biosensor. The sensorgrams for MAbs 7H2, 5A7, 7B10, and 5G2 fitted well to a 1:1 binding model, allowing accurate kinetic constants for these antibodies to be calculated (Table 2
). The data for MAb 3D8 best fitted a heterogeneous ligand model in which the antibody would recognize two conformations of the immobilized LDL receptor with different affinities (Fig. 3
). Although the Fab monomers were isolated by gel filtration before analysis, the sensorgrams for MAb 6E2 nevertheless best fitted a bivalent analyte model. Fab fragments may have dimerized after purification or on the LDLr surface. In preliminary experiments with an IgG preparation, we had noted that MAb 3D8 bound to LDLr1692 with higher affinity at pH 5.3 than at pH 7.4 (data not shown). This was also the case for the 3D8 Fab fragment. As at pH 7.4, the binding data obtained at pH 5.3 best fitted a heterogeneous ligand model, with the increase in the affinity attributable to an increase in association rate and a decrease in dissociation rate (Table 2). In view of the recent structural model of the LDLr (12), we also tested the binding at pH 5.3 of the 5G2 Fab fragment that is specific for R5. In contrast to 3D8, 5G2 showed slower association and more rapid dissociation at pH 5.3 than at pH 7.4 (Table 2). Nevertheless, based on the surface capacity, the 5G2 epitope appeared to be equally accessible at pH 7.4 and pH 5.3 (data not shown).
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TABLE 2. Rate and affinity constants for the interaction of the various MAbs with immobilized LDLr as determined by fitting sensorgram data to appropriate interaction models
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Fig. 3. Binding of MAb 3D8 to immobilized LDLr1692 as monitored by surface plasmon resonance. Sensorgrams for the binding of 3D8 to immobilized LDLr1692 when tested at concentrations of 300 nM (blue), 500 nM (red), 1,000 nM (brown), 1,500 nM (purple), and 2,000 nM (green) are shown at left. The data were fitted to a heterogeneous ligand model in which two conformations of LDLr1692 would exist, B1 and B2, that are recognized with different affinities by 3D8. The black lines represent the theoretical curves for each 3D8 concentration calculated according to the heterogeneous ligand model and given the rate and affinity constants presented in Table 2. In the right panel, the data were deconvoluted to illustrate the theoretical contributions to the sensorgrams of the binding of 3D8 to the B1 and B2 conformations of LDLr1692. RU, resonance unit.
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The antibodies were also tested for their abilities to block the binding of LDL to the LDLr on the surface of cultured human fibroblasts (Fig. 4
). MAbs specific for epitopes in R3 (7H2), R5 (5G2), and R7 (6E2) prevented the binding of LDL to the LDLr, whereas MAbs specific for epitopes in R1 (7B10) and R2 (5A7) blocked
35% and 70% of binding, respectively. Surprisingly, MAb 3D8 reproducibly increased the binding of LDL to the LDLr. As had been reported previously (18), MAb C7, which is specific for an epitope in R1 (26), blocked
50% of binding, whereas a control antibody, specific for human apoA-I (5F6) (27), did not influence LDL binding to the LDLr.

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Fig. 4. Ability of anti-LDLr MAbs to block the binding of LDL to the LDLr on cultured human fibroblasts. Binding of 125I-LDL (3 µg/ml) at 4°C to cultured human fibroblasts was determined in the absence of antibody or in the presence of 50 µg/ml IgG of anti-LDLr MAbs 7B10, 5A7, 3D8, 7H2, 5G2, 6E2, and C7 or the anti-human apolipoprotein A-I 5F6. Results are presented as the ratio of binding in the presence of IgG (B) to binding in the absence of IgG (Bo). Each antibody was tested in triplicate in three separate experiments. Error bars represent the SD.
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DISCUSSION
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We obtained a panel of MAbs from Ldlr/ mice that had been immunized with a fragment of the human LDLr composed of the LBD and EGFPHD. We chose Ldlr/ mice for immunization because the immune response should not be limited by immunological self-tolerance to the endogenous murine LDLr, as would be the case with wild-type mice. Therefore, we anticipated that a broad immune response would be elicited in Ldlr/ mice after immunization with LDLr1692 that would include antibodies to highly conserved epitopes, such as functional sites on the molecule. For the LBD, this appeared to be the case. Hybridomas were obtained that secrete MAbs specific for epitopes in five of the seven ligand binding repeats as well as an epitope(s) that appears to span the R1-R2 junction. In contrast, we failed to identify any antibodies that recognize epitopes in the EGFPHD. Algorithms to predict antigenic sites in proteins based on the primary structure (28, 29) indicate that the LDLr EGFPHD should be at least as immunogenic as the LBD. It is possible that immunological tolerance to EGFPHDs of other members of the LDLr gene family constrains the immune response to the human LDLr EGFPHD in Ldlr/ mice and, as a consequence, the immune response is primarily directed against the LBD. We previously reported a panel of 20 murine MAbs to human cholesteryl ester transfer protein (CETP) that are specific for at least nine distinct epitopes, all of which are located in the C-terminal half of CETP (30, 31). As in the present case, it is not apparent why a large part of the molecule should not elicit a humoral immune response, as mice do not have a functional CETP gene (32).
Our goal was to obtain anti-LDLr MAbs that could be used to study LDLr conformation and folding. Several of the MAbs do have specific conformational constraints for their binding to the LDLr. As certain MAbs only recognize the nonreduced LDLr, their epitopes likely require native disulfide bonds. Because these MAbs are specific for epitopes in R1, R3, R5, and R7, they will be useful probes to follow the folding of the LBD of newly synthesized LDLr. The binding of MAb 3D8 to immobilized LDLr1692 monitored by surface plasmon resonance best fits a heterogeneous ligand model indicating that 3D8 possibly recognizes two conformational forms of LDLr1692 with different affinities (Table 2). Moreover, 3D8 shows more rapid association and slower dissociation at pH 5.3 than at pH 7.4. As 3D8 does not recognize LDLr variants that lack either R1 or R2 (Table 1), MAb 3D8 appears to recognize an epitope that spans R1 and R2. The NMR structure of a concatemer of R1 and R2 shows that there are few intermodule interactions and that the four residue linker likely allows considerable flexibility between modules (8). The antibody may preferentially recognize a conformational state of the LDLr that is in low abundance at neutral pH but is much more frequent at pH 5.3. Alternatively, at the lower pH, the increased protonation of residues in both LDLr1692 and in 3D8 may favor antibody-antigen association. The kinetic data cannot differentiate between these two possibilities. Based on the structural model of the extracellular domain of the LDLr at pH 5.3 (3), one might anticipate that the 5G2 epitope in R5 would be poorly accessible at pH 5.3. This was not the case. Thus, the 5G2 epitope may remain accessible when R5 is docked with the ß-propeller at pH 5.3, or, when immobilized on the biosensor chip, LDLr1692 may maintain its extended conformation.
Antibodies specific for R3, R5, and R7 efficiently block the binding of LDL to the LDLr on cultured human fibroblasts, whereas partial blocking is seen with MAbs to R1 or R2. This roughly parallels the results reported for LDL binding to LDLr variants in which individual LBD repeats were deleted; LDLr variants lacking R3, R4, R5, R6, and R7 could not bind LDL, whereas deletion of R2 reduced LDL binding and deletion of R1 had little effect (10, 11). To our knowledge, this is the first report of MAbs that are capable of totally blocking LDL binding to the LDLr. The lack of inhibition of LDL binding to the LDLr by 3D8 may reflect its relatively low affinity at pH 7.4, although it is unclear why binding would be increased in the presence of the antibody.
In summary, we describe the production and characterization of a panel of MAbs to the LBD of the LDLr that should be useful probes to study the folding and conformation of the LDLr. Moreover, as certain of the antibodies can inhibit the binding of LDL to the LDLr, they should be valuable reagents for determining the contribution of the LDLr to lipoprotein binding. Finally, this study is another example (33, 34) of the utility of genetically modified mice for the production of monoclonal antibodies.
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ACKNOWLEDGMENTS
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This work was supported by Operating Grant MGP-44361 from the Canadian Institutes of Health Research. The authors thank Dr. David Russell for his generous gift of plasmids and Dr. André Gauthier for intravenous injections of mice.
Manuscript received March 17, 2006
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