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Journal of Lipid Research, Vol. 48, 2065-2071, September 2007 Cloning and characterization of the hamster and guinea pig nicotinic acid receptors
Schering-Plough Research Institute, Department of Cardiovascular and Metabolic Diseases, Kenilworth, NJ 07033 Published, JLR Papers in Press, June 30, 2007.
1 To whom correspondence should be addressed. e-mail: scott.greenfeder{at}spcorp.com
In this study, we present the identification and characterization of hamster and guinea pig nicotinic acid receptors. The hamster receptor shares 80–90% identity with the nucleotide and amino acid sequences of human, mouse, and rat receptors. The guinea pig receptor shares 76–80% identity with the nucleotide and amino acid sequences of these other species. [3H]nicotinic acid binding affinity at guinea pig and hamster receptors is similar to that in human (dissociation constant = 121 nM for guinea pig, 72 nM for hamster, and 74 nM for human), as are potencies of nicotinic acid analogs in competition binding studies. Inhibition of forskolin-stimulated cAMP production by nicotinic acid and related analogs is also similar to the activity in the human receptor. Analysis of mRNA tissue distribution for the hamster and guinea pig nicotinic acid receptors shows expression across a number of tissues, with higher expression in adipose, lung, skeletal muscle, spleen, testis, and ovary.
Supplementary key words GPR109A niacin HM74A Abbreviations: NAR, nicotinic acid receptor
Niacin (nicotinic acid) has been used to treat dyslipidemias since the 1950s, when it was discovered that the B-vitamin reduces plasma cholesterol levels (1). In the clinic, niacin has been used to reduce plasma LDL levels, increase HDL, decrease plasma triglycerides, and decrease lipoprotein [a] in patients with or at risk for cardiovascular disease (2–4). The benefits of niacin therapy are limited by poor patient compliance as a result of undesirable side effects. The most common side effect is flushing or cutaneous vasodilation accompanied by a burning sensation, itching, and occasionally hypotension. Pretreatment with aspirin or indomethacin reduces the incidence of flushing for most patients (5, 6).
In 2003, several groups reported the identification of a receptor for nicotinic acid, GPR109A (HM74A in humans, PUMA-G in mice) (7–9). GPR109A is a Gi GPR109A is closely related to two other G protein-coupled receptors that are also expressed in human adipose tissue, GPR109B (HM74) and GPR81 (9). All three genes are located on chromosome 12 in humans, 12q24.31 (9). GPR109B is a low-affinity receptor for nicotinic acid, with activation occurring in the 10–30 µM range. GPR109B is not found in rats or mice, whereas both GPR109A and GPR81 are (7, 9). The endogenous function and ligands for these three related receptors are unknown at present. In this study, orthologs of GPR109A were cloned from the genomic DNA of hamster and guinea pig. The mRNA expression levels in different tissues were examined. The cloned receptors were also characterized by radioligand binding and functionally by measurement of adenylyl cyclase activity. No evidence of a GPR109B homolog in either hamster or guinea pig genomic DNA was found.
Materials Nicotinic acid and various analogs were purchased from Sigma (St. Louis, MO), Maybridge (Trevillet, Tintagel, Cornwall, UK), Onbio (Richmond Hill, Ontario, Canada), and Tocris Bioscience (Ellisville, MO).
cDNA cloning of a full-length guinea pig and hamster GPR109A (nicotinic acid receptor) receptor To obtain the 3' end sequences of guinea pig and hamster GPR109A, a TOPO Walker kit (Invitrogen) was used. Three forward primers for each species were designed based on the known 5' end sequence (Table 1 , primer set A). Genomic DNA from each species was digested with PstI enzyme and ligated to a linker provided with the kit. Nested PCR was subsequently carried out using GPR109A-specific primers together with linker primers supplied with the kit. The final PCR products were cloned into pCR4 TOPO for sequencing.
The sequences for both 5' and 3' fragments of GPR109A from various independent PCRs were assembled using Gene Jockey II software (Biosoft, Cambridge, UK) to obtain a consensus full-length sequence for both guinea pig and hamster nicotinic acid receptor (NAR). The CLUSTAL algorithm (12) was used to perform multiple sequence alignments of both cDNA and protein sequences using Lasergene software (DNASTAR, Inc., Madison, WI).
Construction of a plasmid for GPR109A expression
Screening for the expression of a GPR109B (HM74) homolog
Generation of CHO-K1 cells stably expressing GPR109A (NAR)
RT-PCR and real-time PCR For RT-PCR, 2.5 µg of total RNA were reverse-transcribed using the SuperScript III First Strand Synthesis System for RT-PCR, oligo(dt) (Invitrogen). Five microliters of the first strand cDNA was used for real-time PCR using species-specific NAR primers (Table 1, primer set D). The cDNA and primers were added to the SYBR Green Master Mix (Applied Biosystems, Foster City, CA). The PCR program used was the following: 50°C for 2 min, 95°C for 10 min, and 40 cycles of 95°C for 15 min and 60°C for 1 min. GAPDH was used as an internal control for data normalization. The primers for GAPDH were purchased from Clontech. The concentration of each transcript (expressed as picograms of NAR per nanogram of GAPDH cDNA) was quantified using the comparative cycle threshold method on an ABI Prism 7700 Sequence Detection System (Applied Biosystems).
Northern blot analysis
Membrane preparation
Radioligand binding For competition binding, 60 nM [3H]nicotinic acid was incubated with human, hamster, or guinea pig GPR109A membranes as described above in the presence of various concentrations of competing test compounds.
cAMP determinations
cDNA cloning of a full-length guinea pig and hamster GPR109A (NAR) receptor Using the strategies described above, two full-length cDNA sequences coding for guinea pig NAR and hamster NAR were obtained (GenBank accession numbers EF185820 and EF185821). For the guinea pig, a total of 1,290 bp of NAR sequence consisting of a 1,089 bp coding sequence, a 151 bp 5' untranslated region, and a 51 bp 3' untranslated region was isolated. For the hamster NAR sequence, a total of 1,510 bp of NAR sequence was obtained, 1,080 bp of which was a coding sequence; the lengths of the 5' and 3' untranslated regions were 157 and 273 bp, respectively. Based on multiple sequence alignment of the cDNA coding regions (data not shown), guinea pig cDNA has 78.9, 80.5, 78.4, and 79.3% identity with that of hamster, human, mouse, and rat, respectively. Hamster cDNA has 82.6, 89.3, and 89.2% identity with the sequences of human, mouse, and rat, respectively. Subsequent to our work, a tentative genomic sequence for guinea pig was submitted to GenBank in November 2005 (accession number AAKN01762938), which contains the GPR109A sequence as identified in this report.
Figure 1
shows an alignment of GPR109A proteins from various species. The prediction of transmembrane helices in each protein was carried out using the TMHMM algorithm at http://www.cbs.dtu.dk/services/TMHMM-2.0. The guinea pig NAR protein is more distantly related to that of other rodents and human (
As shown in Fig. 2 both guinea pig and hamster show an 4.2 kb RNA species upon Northern blot analysis of RNA from adipose tissue. In guinea pig, it appears that this is the only species of RNA detected. Two additional bands are visible in the hamster RNA, in the range of 1–1.5 kb. The exact nature of these RNA species is unknown.
Tissue distribution of hamster and guinea pig GPR109A (NAR) The tissue distribution of hamster and guinea pig GPR109A was determined by quantitative real-time PCR using hamster- or guinea pig-specific GPR109A primers (Table 1, primer set D) and mRNA isolated from various tissues. The distribution in both species is consistent with that seen in other species (7–9). Expression is fairly widespread, with highest expression in lung, spleen, testis, and adipose in hamsters (Fig. 3A ) and in spleen, lung, stomach, skeletal muscle, ovary, and adipose in guinea pigs (Fig. 3B).
GPR109B (HM74) homolog GPR109B is a highly related homolog of GRP109A (95% identity at the amino acid level) that to date has only been found in humans (7, 9) and chimpanzees (based on in silico genomic sequence analysis; data not shown) and that apparently has arisen from gene duplication. GPR109B has a 24 amino acid extension on the C terminus that results from the deletion of 5 bp before the stop codon of GPR109A. The DNA sequences of human GPR109A and GPR109B around this 5 bp difference are nearly identical. Therefore, primers flanking the stop codons of the guinea pig and hamster GPR109A were used to generate PCR fragments from the corresponding genomic DNA and cDNA. Examination of PCR products by direct sequencing revealed no evidence of a GPR109B ortholog in either guinea pig or hamster. In addition, there is no GPR109B gene sequence found in the guinea pig genome sequence deposited in GenBank.
Radioligand binding
Functional analysis Nicotinic acid and related compounds were tested for their ability to inhibit forskolin-stimulated cAMP production in stably transfected cells expressing the hamster, guinea pig, or human GPR109A (Table 4 ). The human and hamster EC50 values for nicotinic acid were very similar, at 50 and 74 nM, respectively. For the guinea pig receptor, which is more distantly related to the other two, the EC50 for nicotinic acid was 329 nM (Fig. 4C, Table 4). Acifran was slightly more potent than nicotinic acid in hamster (EC50 = 46 nM) and guinea pig (EC50 = 249 nM), but not in human (EC50 = 123 nM). The other compounds tested showed a similar order of potency between the three species, with the exceptions of 5-methyl-2-pyrazine carboxylic acid, 5-methyl nicotinic acid, and 6-methyl nicotinic acid. As in the binding studies, these compounds were much less potent in the guinea pig than in hamster or human (Table 4). Nicotinamide had no effect on forskolin-stimulated cAMP accumulation.
This study presents the cloning of the hamster and guinea pig nicotinic acid receptors (GPR109A) from genomic DNA and the subsequent characterization of these receptors expressed in stable cell lines. The GPR109A ortholog in hamster is closely related to its human, rat, and murine counterparts based on cDNA and amino acid sequence comparisons, whereas that of the guinea pig is more distantly related. As has been reported for rat and mouse, GRP109A appears to be the sole nicotinic acid receptor in both hamster and guinea pig, because no evidence of a GPR109B homolog was found in either species (7, 9). This is not surprising, because an examination of genomic sequences of various species available to date indicates that GPR109B exists only in humans and chimpanzees and thus may be a Hominoidea-specific receptor. In humans, mice, and rats, GPR109A is expressed in adipose, spleen, lung, and immune cells (7, 9). Expression in hamster and guinea pig is fairly widespread, with higher expression of hamster GPR109A in lung, spleen, testis, and adipose. The guinea pig GPR109A exhibited higher expression in spleen, lung, skeletal muscle, stomach, ovary, and adipose. Because the physiological role of the nicotinic acid receptor is unknown at present, the significance of these findings, compared with the expression patterns of GPR109A in human, rat, and mouse, cannot be fully determined. To explore the pharmacology of these receptors, binding and functional activity were studied in cells expressing recombinant hamster, guinea pig, or human GPR109A. Binding affinities for [3H]nicotinic acid were similar for all three receptors. In competition binding, the Ki values and the order of potency for nicotinic acid, Acipimox, Acifran, and related analogs were again similar among the three species. The sole exception was the Ki for 5-methyl-2-pyrazine carboxylic acid, which was 10-fold higher in guinea pig than in hamster and human. In a recent paper, Tunaru et al. (14) described the ligand binding site for nicotinic acid, with R111 in transmembrane domain III (TMIII) as the critical docking point for the carboxylic group of nicotinic acid and with N86/W91 (TMII/ECL1), F276,Y284 (TMVII), and S178 (ECL2) interacting with the heterocyclic ring. These residues are conserved in hamster and guinea pig. However, the guinea pig NAR has two additional amino acid residues (Y168/L169) inserted in its ECL2 compared with the human, hamster, mouse, and rat sequences (Fig. 1). It is possible that these extra amino acids have altered the putative nicotinic acid binding pocket in the guinea pig. Interestingly, removal of these two residues in the guinea pig NAR causes a decrease in the functional response to nicotinic acid (data not shown). The physiological function of NAR in vivo is currently unknown; therefore, the significance of these additional amino acids in the guinea pig cannot yet be determined. The EC50 values for cAMP inhibition by nicotinic acid and related analogs were slightly higher in the guinea pig NAR compared with the hamster and human, although the order of potencies was approximately the same in the three species. Again, the exceptions to this rank order were 5-methyl-2-pyrazine carboxylic acid, 5-methyl nicotinic acid, and 6-methyl nicotinic acid. Acifran was more potent than nicotinic acid in both rodents, but not in the human receptor, in the cAMP assay. However, the binding studies indicate that nicotinic acid binds with greater affinity to the receptor compared with Acifran in all three species. It may be that Acifran is more effective than nicotinic acid at signaling through GPR109A in these rodents. Given the apparent differences in both receptor expression and in the binding and functional activation of the guinea pig and hamster receptors, it would be of interest to examine the effects of nicotinic acid on the lipid profile of these species. Data regarding the effect of nicotinic acid on lipolysis in guinea pigs are lacking. However, several studies document the antilipolytic effect of nicotinic acid on adipose tissue and isolated adipocytes from hamsters (15–17). GPR109A, recently identified as the target of the antilipolytic agent niacin, appears to be highly conserved throughout mammalian species. This study presents the identification and characterization of the high-affinity nicotinic acid receptors in hamster and guinea pig. It is hoped that these observations regarding the subtle differences in receptor architecture and ligand binding may add to the understanding of this receptor and will facilitate the development of better treatments for dyslipidemias. Manuscript received January 5, 2007 and in revised form June 21, 2007.
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